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MARGI and ChAR-seq both of those ligate a 5-App oligonucleotide ‘bridge’ or ‘linker’ to the 3’-end of RNA. We have attached the MARGI sign-to-sound figures for reviewers, but decided not to set this examination in the textual content mainly because we did not right examine mammalian data. To address this place, we additional a sign-to-sounds calculation in between ChIRP-seq and ChAR-seq for the two roX1 and roX2 (Figure 3F). Briefly (see subsection «ChAR-seq and ChIRP-seq sign-to-sounds comparison»), we utilised the exact signal-to-sounds (SNR) metric employed by Howard Chang’s Lab in a similar ChIRP-seq paper (Quinn et al., 2014). This metric considers the chrX bins or peaks with the most roX RNA binding situations to be ‘signal’ and treats roX RNA binding in randomly chosen autosomal bins to be ‘noise’. Second, in ChAR-seq the closing RNA-bridge-DNA molecule is sequenced with long single-end reads, which preserves the authentic ligation junctions and makes it possible for us to detect multiple bridges and other aberrant ligation events.